i have a very similar setup. I have twin tanks, both feed into a fuel filter and then to a holden VL turbo pump. I have 1 return line going to the left hand tank.
What has happened is that the tanks are emptying together but only refilling the left hand tank and overflows when there is more the 1/2 a tank of fuel in each tank. The right hand tank ran dry and the left hand tank was overfull.
You will need to either split the return line to goto both tanks or have a big leveling hose, or have a surge tank that the return goes to. I will be doing the surge tank system.
Both tanks will feed the surge tank then goto the pump, return will go back to surge tank.
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1974 Moke - 998cc
76 Clubman B16a2 Vtec AWD Turbo 12.9@105mph
https://www.youtube.com/watch?v=V9PW49e1hYs